PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043482 | ||||||||
Common Name | LOC107062934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 28852.6 Da PI: 7.7692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.1 | 6.9e-23 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknr.atksgy 82 + GfrF+Pt+ e v +L + ++gk ++ + +i++ d y k ePwd+ + +++ ++ ++ fF+++ kk+ +++r +r + ++g PGSC0003DMP400043482 5 QEGFRFSPTEAEAV-TFLLRFIAGKLMNDSGFITTHgDTYsKQEPWDIYShgvpCCNDDDCtQYRFFITKLKKK-SKSRYSRdVGNKGN 91 68************.8999999999999888888877766256*****73356644444442555777666665.56788886889*** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk++ k+k+v +++g ++g kk++++ ++ k e+ dW+m+ey+l PGSC0003DMP400043482 92 WKQQDKSKPVRKNGGPVIGYKKSMTYM-NKGYKKENGDWLMKEYTL 136 **************************9.45555589********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-21 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.818 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 6 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENLQEGFRF SPTEAEAVTF LLRFIAGKLM NDSGFITTHG DTYSKQEPWD IYSHGVPCCN 60 DDDCTQYRFF ITKLKKKSKS RYSRDVGNKG NWKQQDKSKP VRKNGGPVIG YKKSMTYMNK 120 GYKKENGDWL MKEYTLSKYL LDKFDKDCRD YVLCSVKKRT RSKGKLKLVN IVPEEELEDQ 180 SSAESTSFTE GLQGGGGKYV TQLELQNDMH EGTSNFVEPL SAPYTFEPMS MLDFDYQYLP 240 ADFDCLRSIT A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043482 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169695.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | M1CCG7 | 0.0 | M1CCG7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064497 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-12 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043482 |
Entrez Gene | 107062934 |
Publications ? help Back to Top | |||
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