PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043322
Common NameLOC102579359
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 325aa    MW: 36015 Da    PI: 10.2149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043322genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.2e-32253310359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  PGSC0003DMP400043322 253 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 310
                           99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.9E-18203249IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33239310IPR003657WRKY domain
PROSITE profilePS5081131.031246312IPR003657WRKY domain
SuperFamilySSF1182903.92E-27248310IPR003657WRKY domain
SMARTSM007742.7E-38251311IPR003657WRKY domain
PfamPF031062.8E-27253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAVELMMDYR NNRNSTTNCI NFVAKLEEKS VVQEAASGLE SVEKLIRLLS QTQSQQIQQR  60
NKSPMEIEMV ADAAVTKFKK VISLLDRNRT GHARFRRAPL ASANPLPMNS SKDFVDTKVY  120
SPTPIQQVPL INYDHFNPLV PKTISFSYSP EMSRTNSFNI SSLTGETESK QHSSSNSAFQ  180
ITNLSSQVSN SAGKPPLSSS SLKRKCSLSE NAVSGKCSGS SGRCHCSKRR KLRLKRVVRV  240
PAISMKLSDI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RALDDPTMLI  300
VTYEGEHNHS LSVAETSSLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22239311273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043322
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339860.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX04e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLM1CC130.0M1CC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000642560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.18e-73WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]