PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042976
Common NameLOC102594362
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 854aa    MW: 95443.7 Da    PI: 9.1671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042976genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08175195526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            Cr+fa+ G C++G+ C+F H+
  PGSC0003DMP400042976 175 VCRNFAA-GNCRRGSDCRFVHP 195
                           6******.*************9 PP
2zf-CCCH18.53.5e-06258280326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           t  Cr+f + G C+ G++C+F+H+
  PGSC0003DMP400042976 258 TITCRNFVK-GNCRWGASCRFSHD 280
                           668******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84171197IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6172196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5174194IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6175195IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5258280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.432306332IPR000571Zinc finger, CCCH-type
SMARTSM003560.96306331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MGENAKRRKS LWDAEEESPN SPKYEEWGPP KADNSWQSKS RSGWSSGDNV TGPEDSRKEN  60
YHYKSMSPAF ERRGRRSNSH SPDNGRAQSR RYPGRARSRS RSRSRGRGEG RSRSRSRGRD  120
RFRTRSRSRS RSRSRSRDRG SMRVQNRSRS PPHSSKRDPY ASGDRRTGLH ISSQVCRNFA  180
AGNCRRGSDC RFVHPDAASH RDGGHSEDNL SERLGSRPER GHVSRYNDSE GPGYQSRDRL  240
PDMHHLEDEL HRNRSRGTIT CRNFVKGNCR WGASCRFSHD GASGDTYDKG TRSTSFDHGQ  300
DNQATRTGKS LCEYFAAGKC YKDNCKFSHD ATSRNHEIRP SDDIGGHRFD DKNNWLDGPK  360
WDNEARPSDL VKASGWDESV VRKDTAVTVL TDRTTERPGH NFENENRAWG TEPQFMNSDT  420
ERGVSPHRGS AGHVNALNIS ESSVTQNFAN AQDIHFTSQA SNLNMERASA HVLGHNSNQG  480
APGIILSATA TQPYGSAGSF VQPHGLTEDS IARTLGSNAV NEFMNPRDSV HHVRLPGQSF  540
SGTGFGMSSE HSAVLNGTHQ EQNVFLPIPS AGHNKREEPG TPEMLEFKVP QNLSGTVTGE  600
QVHQMETSPA SMIKKFEEGL REAQLQSVLN PSGPSGMLPS NPISSLVHAL YGQTNPEMRV  660
PDNYHPPDGL ELNTSGNFKL PPDNSFYLDR DSNKVHMDQM NQTSTVDPEL GNNDQIDEVK  720
QQENKLVEVD GKDKLAPEES KDVQENDHPG AMDLHGKVEE GSGNKDEKVM RLFKNALIEF  780
VKEILKPIWK EGKMSREVHK TVVKKVVDKV TGAIQGEQVP KTQEKIEQYL SYSKPKITKL  840
VQAYVERLLK NEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128138RSRSRSRSRDR
2130138RSRSRSRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356284.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_006356285.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_015168257.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBLM1CB950.0M1CB95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637990.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-16C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]