PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042974
Common NameLOC102594362
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 612aa    MW: 67726.8 Da    PI: 6.2972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042974genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-061638326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          t  Cr+f + G C+ G++C+F+H+
  PGSC0003DMP400042974 16 TITCRNFVK-GNCRWGASCRFSHD 38
                          668******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-41339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8211340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-51438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-51638IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.4326490IPR000571Zinc finger, CCCH-type
SMARTSM003560.966489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MHHLEDELHR NRSRGTITCR NFVKGNCRWG ASCRFSHDGA SGDTYDKGTR STSFDHGQDN  60
QATRTGKSLC EYFAAGKCYK DNCKFSHDAT SRNHEIRPSD DIGGHRFDDK NNWLDGPKWD  120
NEARPSDLVK ASGWDESVVR KDTAVTVLTD RTTERPGHNF ENENRAWGTE PQFMNSDTER  180
GVSPHRGSAG HVNALNISES SVTQNFANAQ DIHFTSQASN LNMERASAHV LGHNSNQGAP  240
GIILSATATQ PYGSAGSFVQ PHGLTEDSIA RTLGSNAVNE FMNPRDSVHH VRLPGQSFSG  300
TGFGMSSEHS AVLNGTHQEQ NVFLPIPSAG HNKREEPGTP EMLEFKVPQN LSGTVTGEQV  360
HQMETSPASM IKKFEEGLRE AQLQSVLNPS GPSGMLPSNP ISSLVHALYG QTNPEMRVPD  420
NYHPPDGLEL NTSGNFKLPP DNSFYLDRDS NKVHMDQMNQ TSTVDPELGN NDQIDEVKQQ  480
ENKLVEVDGK DKLAPEESKD VQENDHPGAM DLHGKVEEGS GNKDEKVMRL FKNALIEFVK  540
EILKPIWKEG KMSREVHKTV VKKVVDKVTG AIQGEQVPKT QEKIEQYLSY SKPKITKLVQ  600
AYVERLLKNE A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356284.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_006356285.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_015168257.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBLM1CB950.0M1CB95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637990.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-16C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]