PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042479
Common NameLOC102601011
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 454aa    MW: 50605.5 Da    PI: 8.4401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042479genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011100119221
                           EETTTTEEESSHHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                           +C+ CgksF ++  L  H++
  PGSC0003DMP400042479 100 VCKECGKSFQSWKALFGHMK 119
                           6******************7 PP
2zf-C2H210.90.0014353375123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C k F++   L  H r+H
  PGSC0003DMP400042479 353 HECPICYKIFPSGQALGGHKRSH 375
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.16E-101234No hitNo description
SMARTSM003550.681234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4521239IPR007087Zinc finger, C2H2
PfamPF139121.0E-41235IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-1094121No hitNo description
SMARTSM003550.007899121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76299126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-4100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139123.1E-8101123IPR007087Zinc finger, C2H2
SMARTSM003550.063289311IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053289316IPR007087Zinc finger, C2H2
PfamPF139121.3E-11289312IPR007087Zinc finger, C2H2
SuperFamilySSF576676.59E-6289311No hitNo description
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
SuperFamilySSF576676.59E-6348375No hitNo description
SMARTSM003550.22353375IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891353375IPR007087Zinc finger, C2H2
PfamPF139125.9E-12353376IPR007087Zinc finger, C2H2
PROSITE patternPS000280355375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGYEDHEVLL KHVCKFCNKS FHCGRSLGGH MRSHMVNTTD GETSRKKLPA LIVSNSTTNN  60
NNNNVNLDIG TQNVNYVLRN NPKKTSKFSE DLVDTLLPKV CKECGKSFQS WKALFGHMKC  120
HSSSSSQEED SWNSVSESDT EATAAAAATA TSNKKKRSSR KRYNMAPAAT SSSLTVAANA  180
SSPCVSEIEH EQEEIAMSLI MLSRDVSNWV GHNNVTDQCS DNNSQFLTKS ELIKKVKNGK  240
TEQGESSKSL INGKKRNKSE PLIHGDDEKK KKIKVENENR VISDPKIKFE CTTCNKSFHS  300
YQALGGHRAS HKNSKGETCT GTDIDHVKQI KNGNNNESEF GQNCGSKKQL KMHECPICYK  360
IFPSGQALGG HKRSHLIAEA KKNINNNNNH NQTVEVQKPI PEIRNFLDLN LPAPVEEEDN  420
ILDSSTTEQH IEFQQWWIDS RHKHEQLLGL LSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253271KKRNKSEPLIHGDDEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345158.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLM1CA320.0M1CA32_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.16e-25C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]