PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042286
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 308aa    MW: 34493.6 Da    PI: 5.4213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042286genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-122768346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          ++T++E+el++++++  G++ W+ Ia+ +  gRt++++k+ w++
  PGSC0003DMP400042286 27 SFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 68
                          79******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-181178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-61232IPR009057Homeodomain-like
PROSITE profilePS5129420.2552074IPR017930Myb domain
SMARTSM007171.0E-102472IPR001005SANT/Myb domain
CDDcd001671.97E-82770No hitNo description
PfamPF002492.7E-112768IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-183371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSKKSGYGRS QKQRWNNRLK PDLKQDSFTP QEEELIIKLH ATIGSRWSII AQQLAGRTDN  60
DVKNLWNTKL KKKLSAMGID PVTHKPFSQI LTDYGNIGGF PKARTRFVSL NRELKGAFMS  120
RPEQLQHSLQ NFQNFNSLCV KLPKTEASEE CFFSNNQDSS NINQPPVDLF SELQAIKFVT  180
EASNYNYPKA VFSHHPIPIT DCSTSSPLSS SSSSSASHSL AENQVNWCDY LLDDAFLPSN  240
FKDQEDTLTI EEKLVCGGGE DGSNNVPSMK DFETSLSTKG TSFVEAMLEC ENEMFLNFPG  300
LSEDPFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1547438108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344977.10.0PREDICTED: transcription factor MYB35
TrEMBLM1C9L30.0M1C9L3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-30MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]