PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041700
Common NameLOC102588298
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 629aa    MW: 69388.5 Da    PI: 6.3823
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041700genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.6e-2960144187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+ aL+++r+em+  +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++   + +++++f+qlea
  PGSC0003DMP400041700  60 RWPRQETIALLKIRSEMDVIFRDSSLKGPLWEEVSRKMADLGFHRSSKKCKEKFENVYKYHKRTKDGRASK--ADGKNYRFFEQLEA 144
                           8********************************************************************95..67778*******85 PP
2trihelix103.81.3e-32436521187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k ev aLi++r++++ +++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  PGSC0003DMP400041700 436 RWPKAEVEALIKLRTNLDVKYQENGPKGPLWEEISSGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 521
                           8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.02753117IPR017877Myb-like domain
SMARTSM007173.4E-457119IPR001005SANT/Myb domain
CDDcd122035.37E-2559124No hitNo description
PfamPF138378.4E-1959145No hitNo description
PROSITE profilePS500907.457429493IPR017877Myb-like domain
SMARTSM007174.6E-4433495IPR001005SANT/Myb domain
CDDcd122031.22E-27435500No hitNo description
PfamPF138372.2E-22435522No hitNo description
Gene3DG3DSA:1.10.10.601.6E-4435492IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MLGVSGIVSS EGGGENPESG GGAGSGGSSE IGLGGGGGGG GGSSGGFMTE DGERNSGGNR  60
WPRQETIALL KIRSEMDVIF RDSSLKGPLW EEVSRKMADL GFHRSSKKCK EKFENVYKYH  120
KRTKDGRASK ADGKNYRFFE QLEALENITS HHSLMPPSNT RPPPPPLEAT PINMAMPMAS  180
SNVQVPASQG TIPHHVTVSS APPPPPNSLF APLPHQNASP VALPQPAVNP IPQQVNASAM  240
SYSTSSSTSS DEDIQRRHKK KRKWKDYFDK FTKDVINKQE ESHRRFLEKL EKREHDRMVR  300
EEAWKLEEMA RMNREHDLLV QERAMAAAKD AAVISFLQKI TEQQNIQIPN SINVGPPSPQ  360
VQIQLPENPL PAPVPTHSPQ IQPTVTAAPA PVPAPVPALL PSLSLPLTPP VPSKNMELVP  420
KSDNGGDSYS PASSSRWPKA EVEALIKLRT NLDVKYQENG PKGPLWEEIS SGMKKIGYNR  480
NAKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYKEKAKNP ETTSSFNPSF  540
ALNPENNPMA PIMARPEQQW PLPPHHESTT RIDHENESDN MDEDDHDDDD EEDEDDEEEN  600
NAYEIVANKQ QSSMAAANTT TSTATTTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261QRRHKKKR
2254262QRRHKKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359818.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLM1C8A30.0M1C8A3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000619420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-70Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]