PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041297
Common NameLOC107057785
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 326aa    MW: 37003.4 Da    PI: 4.5864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041297genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.31.6e-15711811127
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskk 96 
                           de+l+ +yL k v+g ++e+ + i+ vd+y   +P++L  +++++ +e++ F++ +kk+ +gk+ nr  +   g Wk   + k+v++kk
  PGSC0003DMP400041297   7 DEQLL-RYLLKFVTGISVEC-DEIRLVDLYGNnKPSQLFDTTATTATEYHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDNGKPVYNKK 93 
                           66666.9***********99.77******97648****866667788********************74445899************** PP

                   NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                           g ++g kkt+ f   ++    +  W+m+eyr
  PGSC0003DMP400041297  94 GLKIGFKKTFRFD--EE----NHVWIMKEYR 118
                           ************7..22....458******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.2661147IPR003441NAC domain
SuperFamilySSF1019412.09E-196146IPR003441NAC domain
PfamPF023657.9E-77118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGMYIDDEQL LRYLLKFVTG ISVECDEIRL VDLYGNNKPS QLFDTTATTA TEYHVFTQLK  60
KKKGNGKNFN RGIVGGGGSW KGIDNGKPVY NKKGLKIGFK KTFRFDEENH VWIMKEYRPS  120
DNILKALRLR GQIRHEEEFA VCRITRSVNS SQVNIPSDHN VENFLDSVLI SASQCQETVE  180
FFAQNQFQEN QDLGQFSAVF AQSQFQDLEQ FNTTNVILSD ESNSILNGNQ IGPVSLVFKE  240
SKLSAAIEEE CSVSVPVVHQ QTPSVKEVEC SVYDIATYHK ELDAYAASQL KSMVPYIPQQ  300
QEDDEADSIP LFYEDFYIDY TDLWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.10.0PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1C7F20.0M1C7F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-06NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]