PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400041252 | ||||||||
Common Name | LOC102602254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 50047.7 Da PI: 4.7713 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 7.8e-11 | 391 | 436 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ PGSC0003DMP400041252 391 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 436 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.5 | 385 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-15 | 388 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-11 | 389 | 440 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-14 | 390 | 446 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-8 | 391 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-12 | 391 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDDRSHQQQQ MTSGLTRYRS APSSYFTSLL SSNNPADVSG GSENCGYARD DFDQLLNPRV 60 SNSGIKQVFD RFVANIGPQD SNPDGLIDDT QQIQQNPMSN MDVRSEVVAP MKQEHEAQQQ 120 QMNYQCQEQQ SQNSQFIAPV KQEITQQNSD YSLTSQMNYQ TQAQQNHNST DFTSGMDNFG 180 RCNRLNQTKM DGGFGTGSSN SNLTRYNSSP AGFFAQVNIE NEYGALRGIG NYGAGSGTNA 240 AGEASFSNPS RFSSQTALPS GQPTSSGLLA PISEFGAKSI EESRRGDESF GKGHKSDESY 300 MAGFPMPSWD DSQILTDDFL QVPDDDEAGS FSNVNPSDNQ SSEGRARPPT LLSHLSLPQT 360 SAELSAMEKL LQDSVPCKVR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN 420 TADMLDFAAD YIKELETQVK ALSETRSKCT CLHE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400041252 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365809.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
Refseq | XP_006365810.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
TrEMBL | M1C7B5 | 0.0 | M1C7B5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061284 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 4e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400041252 |
Entrez Gene | 102602254 |
Publications ? help Back to Top | |||
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