PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041231
Common NameLOC102578195
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 460aa    MW: 51483.4 Da    PI: 5.7719
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041231genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.7e-22126223185
              trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                           +Wt++ v++Li+++  ++++ + +             +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ ++
  PGSC0003DMP400041231 126 KWTDNVVRLLIQVVACVGDDGSLEGpgvglkrksaclQKKGKWKTVSRIMMSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVV 214
                           7**************8888888433355566667788**********************************************558899 PP

              trihelix  77 stcpyfdql 85 
                           ++ ++ d++
  PGSC0003DMP400041231 215 ENPVLMDSM 223
                           888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-19124250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNMLQQPEPM SNNAVHGHQM NHNNVQSSVS AKLGLEHEKT  60
VGLMDAQGCM AYGKDKAVGP SNVVNTSNNP NSNTSDEDEP SFNEDGNGEN NGGAQGKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG PGVGLKRKSA CLQKKGKWKT VSRIMMSNGC  180
HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPVLM DSMPQLSAKA KDTVKKILNS  240
KHLFYREMCA YHNGQKIPDC NDLEFPAHSS PVAALCAKDH NGSQGDEAEE NDESDDDDDE  300
SDDNHGDGDA RKIGDFDERM RRVEENGSFL PQINGNDNFL AEINEFFQDP TKSQWDQKMW  360
IKKRMLQLEE EKIGIQAEAF ELEKRQVKWQ RFCRKKDREF EIERLENKKL MLENEHMALQ  420
LKHKQHELDS TKPNISFNSA PLSLDRPMGR DQLDAARYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365820.10.0PREDICTED: uncharacterized protein LOC102578195
TrEMBLM1C7950.0M1C795_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000612290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-81sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]