PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400041044 | ||||||||
Common Name | LOC102589235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 698aa MW: 76264.5 Da PI: 7.2349 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.6e-07 | 279 | 299 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PGSC0003DMP400041044 279 PCPEFRK-GACQRGDMCEYAHG 299 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.97E-16 | 17 | 150 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-15 | 45 | 139 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.1E-9 | 53 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.14 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 5.26E-13 | 59 | 137 | No hit | No description |
PROSITE profile | PS50297 | 15.99 | 59 | 135 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0053 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.007 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.0E-5 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-5 | 279 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 54 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MTMSNPTIET EDTFASLLEL AANNDIEAFK IWIERDLASI HEVGLWYGRQ KGSKQMVLDH 60 RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPHSKDIN GHYPIDVIVV SPSFHPVKSC LESLLMTSTI GDCKLRVSVS TSSSSPPRSP 180 SPGNRSPSSA SDSTFSPKSA KSSDLPAYSI PEKKEYPVDP SLPDIKNDIY SSDEFRMFSF 240 KIRPCSRAYS HDWTECPFLH PGENARRRDP RKYHYSCVPC PEFRKGACQR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGID CNRRVCFFAH KQEDLRPLYV STGSAVPSPC GNSAAANAMD 360 FAAAMGLIPG SPSSVSVISP SPFTPPISPS ANGISSMGWA QQNAPPLHLP GSFVHSSRLR 420 SSLNARGIPA ADLTTYPDFD VQRQQLLNEF SCLSQRSSMS SDSLNHSARP MTFTRTNLED 480 YFPAESSSPR FSDRTVAQSV FSPTHNSAVC SPFQQQQQSL LSPINMNFSP RNIDNPLLQA 540 SFGVPSSGRM SPRAMEPISP RNSRVSILAQ RDRQQQFRSL SSRDLGSNVS AIVGSPADTW 600 SKWGTDTGKP DWAVNTEELG RLRQSSSFKL ANNGKEPDLS WVQSLVKESP PEMMKDKCVR 660 HVSEPELTGA GADLSEGSTS HSQIDQLSAW METKNTN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400041044 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351322.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 24-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | M1C6T3 | 0.0 | M1C6T3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060975 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400041044 |
Entrez Gene | 102589235 |
Publications ? help Back to Top | |||
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