PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041043
Common NameLOC102589235
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 698aa    MW: 76264.5 Da    PI: 7.2349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041043genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07279299526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C++Gd C +aHg
  PGSC0003DMP400041043 279 PCPEFRK-GACQRGDMCEYAHG 299
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.97E-1617150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-1545139IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-953128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.145989IPR002110Ankyrin repeat
CDDcd002045.26E-1359137No hitNo description
PROSITE profilePS5029715.9959135IPR020683Ankyrin repeat-containing domain
SMARTSM002480.005394126IPR002110Ankyrin repeat
PROSITE profilePS5008811.00794129IPR002110Ankyrin repeat
SMARTSM003562.0E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568279301IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5279299IPR000571Zinc finger, CCCH-type
SMARTSM0035654309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTMSNPTIET EDTFASLLEL AANNDIEAFK IWIERDLASI HEVGLWYGRQ KGSKQMVLDH  60
RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPHSKDIN GHYPIDVIVV SPSFHPVKSC LESLLMTSTI GDCKLRVSVS TSSSSPPRSP  180
SPGNRSPSSA SDSTFSPKSA KSSDLPAYSI PEKKEYPVDP SLPDIKNDIY SSDEFRMFSF  240
KIRPCSRAYS HDWTECPFLH PGENARRRDP RKYHYSCVPC PEFRKGACQR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGID CNRRVCFFAH KQEDLRPLYV STGSAVPSPC GNSAAANAMD  360
FAAAMGLIPG SPSSVSVISP SPFTPPISPS ANGISSMGWA QQNAPPLHLP GSFVHSSRLR  420
SSLNARGIPA ADLTTYPDFD VQRQQLLNEF SCLSQRSSMS SDSLNHSARP MTFTRTNLED  480
YFPAESSSPR FSDRTVAQSV FSPTHNSAVC SPFQQQQQSL LSPINMNFSP RNIDNPLLQA  540
SFGVPSSGRM SPRAMEPISP RNSRVSILAQ RDRQQQFRSL SSRDLGSNVS AIVGSPADTW  600
SKWGTDTGKP DWAVNTEELG RLRQSSSFKL ANNGKEPDLS WVQSLVKESP PEMMKDKCVR  660
HVSEPELTGA GADLSEGSTS HSQIDQLSAW METKNTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351322.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM1C6T30.0M1C6T3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]