PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040973
Common NameLOC102588255
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 273aa    MW: 30285.3 Da    PI: 8.3026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040973genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017210232223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+ +Fs+   L++H ++ H
  PGSC0003DMP400040973 210 QCPQCTLRFSSVTALVSHVQKvH 232
                           7******************9988 PP
2zf-C2H216.22.9e-05244266223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+k F+++ +L+ H  + H
  PGSC0003DMP400040973 244 VCPRCSKGFRDPVSLVEHVEReH 266
                           7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.14E-11652No hitNo description
PROSITE profilePS510397.2721059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.0E-91053IPR000058Zinc finger, AN1-type
SMARTSM001549.1E-41352IPR000058Zinc finger, AN1-type
PfamPF014282.7E-111351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.5E-1090146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.85E-993147No hitNo description
PROSITE profilePS510397.7898145IPR000058Zinc finger, AN1-type
SMARTSM001540.044101142IPR000058Zinc finger, AN1-type
PfamPF014282.6E-7101141IPR000058Zinc finger, AN1-type
SMARTSM003550.017209232IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.48E-5210262No hitNo description
PfamPF138947.3E-4210232No hitNo description
PROSITE patternPS000280211232IPR007087Zinc finger, C2H2
SMARTSM003557.2243266IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203243271IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGTPEFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVYCLEHR SYNRHHCPTA NKNDVTVVVC  60
PLCAKGVHLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREFL TFSNTIKCRE  120
CTVDHCLKHR FGPDHKCPGR KKPEAAFSFM NFRTGSRKDE PKKAPATSSS SWASSFYKAA  180
EAGIAKLSTG RGQSSNATNH SGNANGQVEQ CPQCTLRFSS VTALVSHVQK VHEKNGVMNL  240
TVDVCPRCSK GFRDPVSLVE HVEREHKGTS KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351319.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_015165934.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_015165935.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ8VZ421e-119SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1C6L80.0M1C6L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]