PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 105aa MW: 12472 Da PI: 4.1311 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.3 | 4.1e-08 | 13 | 46 | 96 | 128 |
NAM 96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +++ +g+kk +v+y + + ++ ++t+W+m+e++l PGSC0003DMP400040568 13 TEKIIGIKKYFVYYiTTNIHEQVQTNWIMEEFHL 46 6778**********655778889**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.645 | 1 | 64 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-10 | 13 | 62 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-4 | 15 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MNEPIILKNC GETEKIIGIK KYFVYYITTN IHEQVQTNWI MEEFHLKREN EKLLEWVVCR 60 VHESKNNSER ITCDDNDEIE LSALDEVFLS LDDDQEQEEI SFPY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040568 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-70 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345759.1 | 2e-70 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | M1C5I6 | 1e-69 | M1C5I6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060276 | 2e-70 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13785 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-15 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040568 |
Publications ? help Back to Top | |||
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