PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040420
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 488aa    MW: 53964.9 Da    PI: 4.2994
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040420genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.2e-3058052128
                   NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++ ewyfFs  d+k+ +g ++nrat++gyWk+tgkd++v++ k+++vg+kktLvf++grapkg++t+Wvmhey+l
  PGSC0003DMP400040420   5 KTRDLEWYFFSVLDRKHGNGAKTNRATERGYWKTTGKDRAVHH-KSKVVGMKKTLVFHSGRAPKGQRTNWVMHEYKL 80 
                           56778**************************************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9071103IPR003441NAC domain
SuperFamilySSF1019414.71E-374103IPR003441NAC domain
PfamPF023651.2E-141180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSRLKTRDLE WYFFSVLDRK HGNGAKTNRA TERGYWKTTG KDRAVHHKSK VVGMKKTLVF  60
HSGRAPKGQR TNWVMHEYKL IDEELEKAGV VQDALVLCRV FQKSGAGPKN GEKYGAPFVE  120
EEWEDDELEI VPKEEAAEEV EFGDDIYLDG HDLEQILGAD SPVDGAPLPL NCYSEGNASN  180
SGDISNSFEE AQNWLQQPDE QESFDPAIQQ INADTNPVKH EFMSEPSNSM NTEDVDYLLD  240
EPVVTATDNL QFSDGAFLEA SDLSRPIEVN TSGFDMLEDY LTFFDADDNF QSMGFNPPMM  300
TEGDDHVSDL ASPEEKNIGE VNDQPIAPSE EPEDQKKNVA SSSKLEPSKF GSDYKYPFMK  360
QASCMLGGIP APPAFASEFP SKSAALRMNS SSEASSSIHV TGFIQITNMT MSGNGMDELV  420
GKHGNYNVIL SLGLSQHGDS SAHLESAVSF LPGKTISTVS WCWFYYLFLW VLILSTTFKV  480
GTLIRAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-281010975174NAC domain-containing protein 19
3swm_B3e-281010975174NAC domain-containing protein 19
3swm_C3e-281010975174NAC domain-containing protein 19
3swm_D3e-281010975174NAC domain-containing protein 19
3swp_A3e-281010975174NAC domain-containing protein 19
3swp_B3e-281010975174NAC domain-containing protein 19
3swp_C3e-281010975174NAC domain-containing protein 19
3swp_D3e-281010975174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345843.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1C5730.0M1C573_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000600900.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.14e-97NAC domain containing protein 53
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]