PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040358
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 492aa    MW: 55746.4 Da    PI: 5.5586
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040358genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-185703198
                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          + s++l+ +d++g++W++k+ y+++++r+ lt+GW+ Fv +++L +gD vvF   ++++++l+v+++r
  PGSC0003DMP400040358  5 KPSQELIATDLQGNEWRFKHAYQGQPRRHSLTNGWSTFVTSKKLLAGDLVVFL--RDETGKLHVGIRR 70
                          345699***********************************************..569999*****98 PP
2Auxin_resp31.48.1e-1295154159
            Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                           a+ha++t+s F+v+++P   ++s+F+ +++k+ +  ++   vGm  +m+ e+edss+ r 
  PGSC0003DMP400040358  95 ASHAFATRSLFSVYHKPCYnKSSQFIMSLSKYFEGGNHGRGVGMISRMQHEGEDSSHVRR 154
                           689**************861678********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.14172IPR003340B3 DNA binding domain
SMARTSM010190.0053172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-22281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-17473IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-14470No hitNo description
PfamPF023621.6E-15570IPR003340B3 DNA binding domain
PfamPF065074.3E-995153IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MRQEKPSQEL IATDLQGNEW RFKHAYQGQP RRHSLTNGWS TFVTSKKLLA GDLVVFLRDE  60
TGKLHVGIRR LSYQRCSIGA STFSRQSVEG ALAVASHAFA TRSLFSVYHK PCYNKSSQFI  120
MSLSKYFEGG NHGRGVGMIS RMQHEGEDSS HVRRTNDLDQ ISLSQGQQTT NLMLEEDQYM  180
QDSEAVLDCA QSTMTDLEIR QQTTGSHNNV HCFSPVEDNG LQLHTAVARE NNEGSIPNDT  240
VSIQTRDEDL YELFEDFDFP DSINTSLDTI ALDLGSDWFR STLQEQEETI TPSHPNASED  300
HSRRTSSVLE HPTSFQVMSI STNPSQIPYE GPGRGDEQVP WGGYQVARRT LPILSRVVSR  360
YPDSLVNFRV ASSILQSVYL EILAELVYFL NNLTIVNLSK DQFNVARQHI WDLKLSGIEI  420
GWLENRLLHI DEVFIMESLR QRRQALTRRM EETFKQLDGE LGCIDKELHE LSLKVGPNPP  480
MRLHSVLEGL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-391153155307Auxin response factor 1
4ldw_A1e-391153155307Auxin response factor 1
4ldw_B1e-391153155307Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651290.0HM565129.1 Solanum lycopersicum auxin response factor 13-1 (ARF13-1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163539.10.0PREDICTED: uncharacterized protein LOC102587577 isoform X3
TrEMBLM1C5170.0M1C517_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000599990.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.23e-48auxin response factor 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]