PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G46530.2 | ||||||||
Common Name | ARF11, F11C10.34, F13A10.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 514aa MW: 57689.7 Da PI: 10.0142 | ||||||||
Description | auxin response factor 11 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 37 | 137 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +k+a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ l+ AT2G46530.2 37 FVKILTASDTSTHGGFSVLRKHATEClpsldMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGETGDLR 132 89****************************9666677789************************************************..3489999* PP EEEE- CS B3 94 vkvfr 98 v+v+r AT2G46530.2 133 VGVRR 137 **998 PP | |||||||
2 | Auxin_resp | 95.6 | 7.6e-32 | 163 | 242 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr s+F+++v+k++ a+k+ +s+GmR++m+fe+e+s+er ++Gt++g dl++ +Wp SkWrsL+ AT2G46530.2 163 ASHAVTTTTIFVVFYKPRI--SQFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQ 242 689***************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.23E-39 | 22 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-37 | 31 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.17E-20 | 36 | 137 | No hit | No description |
SMART | SM01019 | 2.3E-21 | 37 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 37 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 37 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-29 | 163 | 242 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.6E-9 | 388 | 439 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.41E-15 | 398 | 479 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 8.1E-4 | 402 | 477 | No hit | No description |
PROSITE profile | PS51745 | 27.948 | 403 | 486 | IPR000270 | PB1 domain |
Pfam | PF02309 | 7.9E-7 | 449 | 486 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020003 | anatomy | plant ovule | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MRPMRFTLRS HYNQKKIEPT SLDPPLVEPA KPTVDSFVKI LTASDTSTHG GFSVLRKHAT 60 ECLPSLDMTQ PTPTQELVAR DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA 120 FVFLRGETGD LRVGVRRLAK QQSTMPASVI SSQSMRLGVL ATASHAVTTT TIFVVFYKPR 180 ISQFIISVNK YMMAMKNGFS LGMRYRMRFE GEESPERIFT GTIIGSGDLS SQWPASKWRS 240 LQIQWDEPSS IQRPNKVSPW EIEPFSPSAL TPTPTQQQSK SKRSRPISEI TGSPVASSFL 300 SSFSQSHESN PSVKLLFQDP ATERNSNKSV FSSGLQCKIT EAPVTSSCRL FGFDLTSKPA 360 SATIPHDKQL ISVDSNISDS TTKCQDPNSS NSPKEQKQQT STRSRIKVQM QGTAVGRAVD 420 LTLLRSYDEL IKELEKMFEI EGELSPKDKW AIVFTDDEGD RMLVGDDPWN EFCKMAKKLF 480 IYPSDEVKKM RSKSLLGDKG TIVNLESDQR TVHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 18 | 266 | 105 | 356 | Auxin response factor 1 |
4ldw_A | 1e-119 | 18 | 266 | 105 | 356 | Auxin response factor 1 |
4ldw_B | 1e-119 | 18 | 266 | 105 | 356 | Auxin response factor 1 |
4ldx_A | 1e-119 | 18 | 266 | 105 | 356 | Auxin response factor 1 |
4ldx_B | 1e-119 | 18 | 266 | 105 | 356 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 487 | 493 | KKMRSKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.36497 | 0.0 | flower| silique| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145361065 | 0.0 | ||||
Genevisible | 265454_at | 0.0 | ||||
Expression Atlas | AT2G46530 | - | ||||
AtGenExpress | AT2G46530 | - | ||||
ATTED-II | AT2G46530 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G46530.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G46530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229924 | 0.0 | AK229924.1 Arabidopsis thaliana mRNA for ARF1 family auxin responsive transcription factor like protein, complete cds, clone: RAFL22-28-H22. | |||
GenBank | AY669791 | 0.0 | AY669791.1 Arabidopsis thaliana clone C105346 ARF11 (At2g46530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_973701.1 | 0.0 | auxin response factor 11 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A178VRP5 | 0.0 | A0A178VRP5_ARATH; Auxin response factor | ||||
STRING | AT2G46530.3 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G46530.2 |
Entrez Gene | 819264 |
iHOP | AT2G46530 |
wikigenes | AT2G46530 |