PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | VOZ | ||||||||
Protein Properties | Length: 332aa MW: 37444.6 Da PI: 6.4197 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 416.1 | 6.3e-128 | 53 | 272 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaata 86 pppsaflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg pv+rp gi+lkd+llf+alsak++gk+vg+pecegaata PGSC0003DMP400039565 53 PPPSAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGYPGRPPVVRPMGIGLKDNLLFQALSAKAHGKDVGVPECEGAATA 141 89***********************944459********************************************************** PP VOZ 87 kspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyein 175 kspwna+elfdl+++ege irewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp++++ewhlyeyein PGSC0003DMP400039565 142 KSPWNAPELFDLKVVEGEIIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQMMNEFGGLKRSYYMDPQPMKNLEWHLYEYEIN 230 ***************************************************************************************** PP VOZ 176 eldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 ++da+alyrlelklvd+kk +kgk+s+ s+adlqk++grlta PGSC0003DMP400039565 231 KYDACALYRLELKLVDGKKIPKGKISNVSVADLQKQMGRLTA 272 ****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MVNNTGVNNL GIATQLDYHS FDLHHEYDQQ YLPGFDALNL CLEDAMPPIH ISPPPSAFLG 60 PKCALWDCPR PAMGSDWCQK SQDYCSDYHA SLAPNEGYPG RPPVVRPMGI GLKDNLLFQA 120 LSAKAHGKDV GVPECEGAAT AKSPWNAPEL FDLKVVEGEI IREWLFFDKP RRAFESGNRK 180 QRSLPDYNGR GWHESRKQMM NEFGGLKRSY YMDPQPMKNL EWHLYEYEIN KYDACALYRL 240 ELKLVDGKKI PKGKISNVSV ADLQKQMGRL TAEFPLDNKR TVKGRVKANM KYVGNIHAAP 300 VPIVPTCEGF DYGNSDPYDY LVDDLDGYFI T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039565 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014516 | 0.0 | BT014516.1 Lycopersicon esculentum clone 133906R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361045.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_006361046.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_006361047.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-145 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | M1C378 | 0.0 | M1C378_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058735 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-148 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039565 |
Publications ? help Back to Top | |||
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