PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039421 | ||||||||
Common Name | LOC102601538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 375aa MW: 40247.2 Da PI: 8.2691 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.8 | 5.7e-36 | 69 | 175 | 1 | 108 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 aa+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++ +++ + +s++ s+ PGSC0003DMP400039421 69 AAPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSPASN 157 689**************************************************************777774443333333333333333 PP TCP 89 kaaksaakskksqksaasal 108 ++ +++++k+++ks++ + PGSC0003DMP400039421 158 REIDENNPQKRRRKSSN--S 175 33333333333333333..2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-29 | 75 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.584 | 76 | 130 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSSFHDPDDD CGTSELSNDV AGDLNDRKMD GDGVADEKKL VFSAMKEEPF DSDHHTLVPS 60 MPMPVATTAA PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL 120 EHAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNREI DENNPQKRRR KSSNSEFIDV 180 GSLNRNAANV SQFAPVTTTP ATIPAAAAAP PPGLLPIWTM SNGGMMVPSN AIWMIPATVP 240 PVNVTNNNNV MVQYPQLWTP VFNLATRPIS SFVAAPTAAA TNNISGPPPI MMAGPLTIND 300 GAATSTGPKI GSNKSSMAPA SLSSSTDRNN NNKNDKPHML RDFSLEIYDR KELQFMSRSG 360 NHQQEPQVTS SKRS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00316 | DAP | Transfer from AT2G45680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358853.1 | 0.0 | PREDICTED: transcription factor TCP9-like | ||||
TrEMBL | M1C2U0 | 0.0 | M1C2U0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058534 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13731 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 6e-60 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039421 |
Entrez Gene | 102601538 |
Publications ? help Back to Top | |||
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