PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039351 | ||||||||
Common Name | LOC102606272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 345aa MW: 39273.7 Da PI: 9.6323 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 105 | 154 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++ykGVr+++ +g+W+AeIrd n ++r +lg+f+taeeAa a+++a+ +++ PGSC0003DMP400039351 105 KKYKGVRQRR-WGKWAAEIRDtK--N--KTRLWLGTFDTAEEAALAYDKAAIEIR 154 59*****998.**********33..3..4**********************9987 PP | |||||||
2 | AP2 | 61.6 | 1.8e-19 | 261 | 311 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd k++r +lg+f+ta eAa a+++a+ +++g+ PGSC0003DMP400039351 261 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 311 8*****998.**********33....36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.56E-27 | 105 | 154 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-19 | 106 | 158 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.811 | 106 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-26 | 106 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-29 | 106 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 106 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 129 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-29 | 261 | 316 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-20 | 261 | 317 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 261 | 316 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-33 | 261 | 324 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 261 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.036 | 261 | 318 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MASKDEHKEN EAVEEPSEIP RDEKSINPVG ESSVVLPRVV RIYMPDSDAT DSSSDEEEKL 60 QGEKSKRHER TCIKEIIIEN GKTRVICKKT SKEKKDIKLF QENAKKYKGV RQRRWGKWAA 120 EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRAMTSKE DLQVKEGVIE PSAIDVVEKS 180 SNQVGEISQV FPRLVRIHVP DHDTTDSSSD EEEKDEEGKS EGHERTCVKE IIIENGKTKV 240 ISKKKSKEKK DLNLMQEDVN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA 300 YDKAAIEIRG ANALTNILKP PAKKNNPIKI NFIVPPLKRQ KADP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 106 | 317 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039351 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ754733 | 0.0 | KJ754733.1 Physalis philadelphica isolate P134 physalis organ size 1 (POS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362748.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_006362749.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_015158628.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q9SUE3 | 4e-27 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | M1C2N1 | 0.0 | M1C2N1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058442 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 1e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039351 |
Entrez Gene | 102606272 |
Publications ? help Back to Top | |||
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