PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039162
Common NameLOC102587955
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 271aa    MW: 29464.6 Da    PI: 6.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039162genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10154201455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  PGSC0003DMP400039162 154 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 201
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-10148205No hitNo description
SuperFamilySSF474591.31E-17148218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18150221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PSSTAAAQQN VSDVPNNDPM  60
VLDRRTTNYS GGGGGSARKR NEDDESAKGV STSGNGLTES ASKRMKVTRS NENCESRGDG  120
EGNSGKSAEQ PAKLAEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KVLQDIVPGC  180
NKVIGKALVL DEIINYIQSL QHQVEFLSMK LEAVNSKMPS IEGYPSKDFG QQPFDTNAMT  240
FGSQATREYA RGTSPDWLHM QLGGGFERTT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357229.10.0PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ69WS32e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLM1C2930.0M1C293_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000582040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-98BIG PETAL P
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]