PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039161

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 233aa MW: 25219 Da PI: 6.528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039161	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	154	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq PGSC0003DMP400039161 154 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 201 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.10E-10	148	205	No hit	No description
SuperFamily	SSF47459	9.68E-18	148	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.593	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-18	150	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-8	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-10	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PSSTAAAQQN VSDVPNNDPM 60 VLDRRTTNYS GGGGGSARKR NEDDESAKGV STSGNGLTES ASKRMKVTRS NENCESRGDG 120 EGNSGKSAEQ PAKLAEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KVLQDIVPGC 180 NKVIGKALVL DEIINYIQSL QHQVEFLSMK LEAVNSKMPS IEGYPSKDVS FV*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269\|PubMed:16902407}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039161

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269\|PubMed:16902407}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013979	0.0	BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015168832.1	1e-170	PREDICTED: transcription factor BPE isoform X2
Swissprot	Q0JXE7	2e-71	BPE_ARATH; Transcription factor BPE
TrEMBL	M1C292	1e-172	M1C292_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058204	1e-169	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	6e-74	BIG PETAL P

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039161

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]