PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039078
Common NameLOC102593096
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 321aa    MW: 35819 Da    PI: 6.6233
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039078genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702187.74.5e-581062394154
                DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                            t+sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla+++ ++++ +++++skr++++      + +     
  PGSC0003DMP400039078 106 ITISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQPQQQE-EDNNKSKRQKDD------SNAGL--- 184
                           689***************************************************99665533.233333333332......22222... PP

                DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                    ++++P++v+s+avf++vr+ss++++e+++aYq+av+i+Gh+fkGiLydqG ++
  PGSC0003DMP400039078 185 -------EVANNFPSKVNSTAVFQRVRMSSIEENEDQIAYQAAVNINGHIFKGILYDQGDNH 239
                           .......23356***********************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.8E-60107238IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-27109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.9E-25190236IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAEFFSLGGG GGREATSSQE YHHHHQETTN STHNWFLYKH HDQELPTYKG FELWQQQQQQ  60
PHHNDEEQNY QILRNPIINP FGLDIGPSND HHHHHETNMM MRSSTITISC QDCGNQAKKD  120
CQHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAS LQPQQQEEDN NKSKRQKDDS  180
NAGLEVANNF PSKVNSTAVF QRVRMSSIEE NEDQIAYQAA VNINGHIFKG ILYDQGDNHE  240
YNYMNGGDHD SSSGGDLVAR QHNLNITGTA TSAVNDATVG GGGGASAVAA EGSSHFLETS  300
LYSSVNTFVA GTQFFPPSRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3319110.0KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343382.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C92e-86EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLM1C2250.0M1C225_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000580590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-60SHI-related sequence 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]