PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038140
Common NameLOC102582606
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 442aa    MW: 48896.1 Da    PI: 7.143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038140genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12378423655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  PGSC0003DMP400038140 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423
                           689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15375433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-11376427No hitNo description
Gene3DG3DSA:4.10.280.103.3E-14377431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDHSRVQQQP ITSGLTRYRS APSSYFSTLL TTTNPVTGGG CGYARDDFSH LQNSSASSST  60
DIEKVFARFV ASIGNSNSNS GNFHTNQQIQ ENPTSNMNVR SDFIVPKQEV TPRLVRHRSS  120
DYSIVSQQMN YQNQSQQFIS PVKKEPETDH DSASQMKYQS QSQQIEKSRE VTDKSFVFAN  180
SANLTPGSSS GGSGGGGNSN LTRYNSSPAG FFAQINIENE YGAMRGIGSY GTGTNAATET  240
SLSTPKSFKT QVGFSSGKPP ASPRLISPIS EFRDKVLEEK STGNEHKNDE NCITDFPMPS  300
WEDSHILSDD FLKAEDIEIE PYSNEDASHN QNSEGLARPP IPLSHHLSLP TSIMEKLLQD  360
SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK  420
ELEKQVKILA EMRSKCTCIN K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364245.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLM1BZU00.0M1BZU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000567160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.16e-46bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]