PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037320
Common NameLOC102600435
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 362aa    MW: 40554.7 Da    PI: 4.6892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037320genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102863261055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           rrRR+riN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  PGSC0003DMP400037320 286 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 326
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14278341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12281336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7286326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEHVGAFFDE EWESLSKLFS STETADFMLQ LQGDLGSLFS MNGSDNAGSS YGTDNPQVAF  60
SQLSDEANNN FQYFSQESSI TSCGSDHGKF FTNPSHEHLQ HSNNIDDVNN QLLQVAINNN  120
LPDEYQSIDF FDMDSKNLEN LCINQDFQAD MTYKDEMVCD QLDNAGISPV SDKEMQLKRK  180
CDKIAPENPK KKSRGSQDAQ KSTKKKAQPK RGKKNQKMTQ INNEEGEEET NNNADNQIAQ  240
SSSCCSSEDD SNASQELNGG TVSSNTKGKS RASRGAATDP QSLYARRRRE RINERLRILQ  300
NLVPNGTKVD ISTMLEEAVT YVKFLQLQIK LLSSDELWMY APLAYHGMDI GIYQKMLPHL  360
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158284.10.0PREDICTED: transcription factor bHLH84
TrEMBLM1BXX50.0M1BXX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000554460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-39bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]