PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400037130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 201aa MW: 22585.5 Da PI: 9.0442 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.9 | 1.3e-11 | 173 | 200 | 27 | 54 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRak 54 ++++++LA++l+L rqV vWFqNrRa+ PGSC0003DMP400037130 173 QKQKQDLARELNLRPRQVEVWFQNRRAR 200 5899**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-8 | 117 | 200 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.102 | 117 | 200 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0064 | 119 | 200 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 120 | 200 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.18E-10 | 121 | 200 | No hit | No description |
Pfam | PF00046 | 4.2E-9 | 173 | 200 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGFDDICNTG LVLGLGFSST ADYKSKKITT PLVGKGPSLG LEPSLTLSLI SGDRTYEQQP 60 IKISKDHQSA DLYRQDSAAS SYSNASVKRE RDVGSEETTT EVERVSSRVI SDEDDDGSNA 120 RKKLRLTKAQ SALLEESFKI HSTLNPVSSY FLIDRYSRIC NMFLLVINFL IMQKQKQDLA 180 RELNLRPRQV EVWFQNRRAR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400037130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363789.1 | 1e-109 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46603 | 6e-39 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | M1BXI8 | 1e-145 | M1BXI8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055199 | 1e-108 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 2e-39 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400037130 |
Publications ? help Back to Top | |||
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