PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037068
Common NameLOC102590311
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family EIL
Protein Properties Length: 669aa    MW: 74133.6 Da    PI: 6.2594
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037068genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3412.64.4e-126393962347
                           XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                           el++rmwkd+++lkrlke++k     ++ a++++ +++ ++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+g+sd+
  PGSC0003DMP400037068  39 ELERRMWKDRVKLKRLKEKQKLA---AQLAAEKQDNKQVTDQATRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGSSDN 124
                           9****************999963...3445899999***************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
                  EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                           +raWWkekv+fd+ng aai+ky+a++l+ +++ ++   + + ++ l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e 
  PGSC0003DMP400037068 125 IRAWWKEKVKFDKNGLAAIAKYEAECLARGDGVGS--PNGNPQSVLEDLQDATLGSLLSSLMQHCDPPQRKYPLEKGISPPWWPTGDEG 211
                           ****************************9988887..568888899******************************************* PP

                           HHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX. CS
                  EIN3 180 wwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss. 265
                           ww+++gl+k q+ ppy+kphdlkk+wkv+vLtavikhmsp+i++ir+l r+sk+lqdkm+akes ++l+vl++ee+ +++  ++  ss 
  PGSC0003DMP400037068 212 WWAKMGLPKGQK-PPYRKPHDLKKMWKVGVLTAVIKHMSPDIAKIRKLIRKSKSLQDKMTAKESSIWLAVLSREEATLQQAGSEngSSs 299
                           ************.9*****************************************************************9999966335 PP

                           .....XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XX CS
                  EIN3 266 .....slrkqspkvtlsceqkedvegkkeskikhvqavktta..........gfpvvrkrkkkpsesakvsskevsrtcqssqfrgset 339
                                 +r +++k  +s+++++dv+g+++   + ++ +++++          + + ++k + + ++++ + s+ + ++ q s + g e 
  PGSC0003DMP400037068 300 ieepaGSRGEKKKSLISSDSDYDVDGTDDGIGSVSSRNERRNhfhplnairqSHQSTEKGDGHHRRRKRARSNLTEKQIQPSLLHGDEH 388
                           7777666679999999*********7777765555544444466666666653333333333333333333333445566666777777 PP

                           XXXXXXXX CS
                  EIN3 340 elifadkn 347
                           +++++d n
  PGSC0003DMP400037068 389 SNTLPDIN 396
                           77776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-12139285No hitNo description
Gene3DG3DSA:1.10.3180.104.2E-68163291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.22E-59166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAVMDEIEID VSSDIEIDDI KCDNIAEKDV SDEEIEPNEL ERRMWKDRVK LKRLKEKQKL  60
AAQLAAEKQD NKQVTDQATR KKMSRAQDGI LKYMLKLMEV CNARGFVYGI IPDKGKPVSG  120
SSDNIRAWWK EKVKFDKNGL AAIAKYEAEC LARGDGVGSP NGNPQSVLED LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKGI SPPWWPTGDE GWWAKMGLPK GQKPPYRKPH DLKKMWKVGV  240
LTAVIKHMSP DIAKIRKLIR KSKSLQDKMT AKESSIWLAV LSREEATLQQ AGSENGSSSI  300
EEPAGSRGEK KKSLISSDSD YDVDGTDDGI GSVSSRNERR NHFHPLNAIR QSHQSTEKGD  360
GHHRRRKRAR SNLTEKQIQP SLLHGDEHSN TLPDINSSEM LLAGRITSDS LQGNDKSEAT  420
KPVENDTESQ SELRLQDSNL SFVPSANVVS TEDTYIGAGP SLYPMSLNSA VVPYESEMHL  480
ENQGSIVQHQ FQDAQFHGLQ KISGMNDGPQ ISLSHYGPPN NGLQYGPHSS IVHTELQVSE  540
FAHGSQFSNF SQPPVYHSYS SAEFGSTHAE PQSHLACNEL QIRPRDSGVG LSLHGSGNSK  600
VNHHDGKDVF GNNHDRHIDM PFASPLTIGS SYATLGSPFD LGIDVQSHFD NSDYDLDFDK  660
ELMSFFAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-701652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164694.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-169EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLM1BXD00.0M1BXD0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-147ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]