PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037067
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family EIL
Protein Properties Length: 529aa    MW: 58409.2 Da    PI: 5.6372
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037067genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3170.32.2e-52371562124
                           XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                           el++rmwkd+++lkrlke++k     ++ a++++ +++ ++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+g+sd+
  PGSC0003DMP400037067  37 ELERRMWKDRVKLKRLKEKQKLA---AQLAAEKQDNKQVTDQATRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGSSDN 122
                           9****************999963...3445899999***************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgess 124
                           +raWWkekv+fd+ng aai+k++a    +++e++
  PGSC0003DMP400037067 123 IRAWWKEKVKFDKNGLAAIAKEEATLQQAGSENG 156
                           **********************654433333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.2E-5237155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MINADVFGNS SDIEIDDIKC DNIAEKDVSD EEIEPNELER RMWKDRVKLK RLKEKQKLAA  60
QLAAEKQDNK QVTDQATRKK MSRAQDGILK YMLKLMEVCN ARGFVYGIIP DKGKPVSGSS  120
DNIRAWWKEK VKFDKNGLAA IAKEEATLQQ AGSENGSSSI EEPAGSRGEK KKSLISSDSD  180
YDVDGTDDGI GSVSSRNERR NHFHPLNAIR QSHQSTEKGD GHHRRRKRAR SNLTEKQIQP  240
SLLHGDEHSN TLPDINSSEM LLAGRITSDS LQGNDKSEAT KPVENDTESQ SELRLQDSNL  300
SFVPSANVVS TEDTYIGAGP SLYPMSLNSA VVPYESEMHL ENQGSIVQHQ FQDAQFHGLQ  360
KISGMNDGPQ ISLSHYGPPN NGLQYGPHSS IVHTELQVSE FAHGSQFSNF SQPPVYHSYS  420
SAEFGSTHAE PQSHLACNEL QIRPRDSGVG LSLHGSGNSK VNHHDGKDVF GNNHDRHIDM  480
PFASPLTIGS SYATLGSPFD LGIDVQSHFD NSDYDLDFDK ELMSFFAS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164694.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLM1BXC80.0M1BXC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551020.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.12e-54ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]