PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400036603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 36206.4 Da PI: 8.2756 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.4e-50 | 30 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 pGfrFhPtdeelv +yL+kk+e+k++ l e+ik++diyk++PwdLpk + +++ekewyfF+kr++ky+++ r+nr ++ sg+Wkatg PGSC0003DMP400036603 30 LPGFRFHPTDEELVGFYLRKKIEKKTIGL-EIIKQIDIYKYDPWDLPKgSNNNGEKEWYFFCKRSRKYKNSLRPNRvTAGSGFWKATGI 117 69*************************99.89***************535666889********************5556********* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s +g+ +glkk+Lv+y+g+a kg+ktdW mhe+rl PGSC0003DMP400036603 118 DRPIYS-SGKCIGLKKSLVYYRGSAGKGTKTDWQMHEFRL 156 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-53 | 29 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.391 | 29 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 31 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEVEKINSIV TNNYYKKDED EDEDEDDVVL PGFRFHPTDE ELVGFYLRKK IEKKTIGLEI 60 IKQIDIYKYD PWDLPKGSNN NGEKEWYFFC KRSRKYKNSL RPNRVTAGSG FWKATGIDRP 120 IYSSGKCIGL KKSLVYYRGS AGKGTKTDWQ MHEFRLPVEN DKSTKHLHAN FTIPQETETW 180 TLCRILKRNV LYKKPIPDWK EVAKKQRNNS VMNKDVLSST ICSNNSIESS SNNSQIYISF 240 STASVVNQNT YTNTVTENKH QFVSQQSSGT SSQSTTVGAA TSNSSTPLDF NEWLEHGNWD 300 ELKSIFEFSF DPLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 31 | 189 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 31 | 189 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 31 | 189 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 31 | 189 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 31 | 189 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 31 | 189 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400036603 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353084.2 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | M1BW99 | 0.0 | M1BW99_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400054407 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-77 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400036603 |
Publications ? help Back to Top | |||
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