PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400036170
Common NameLOC102591091
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 493aa    MW: 53992.3 Da    PI: 7.5006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400036170genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09313360455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400036170 313 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 360
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-10307364No hitNo description
SuperFamilySSF474599.29E-17307376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6313360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEKEYFMNGG IPNPALQFEP TMAFPSWNPL HSGQSSDCLF NPNWDHSTAQ FNQFDSTLNS  60
IVSSSPAELV GKRSPQPVFN NLHNNSNNSC YSTPVNSPPK LHIPMMGKDN IPNLGSSLPP  120
PLPADPSFAQ RAAKFSCFGS SSFNGRTSPL GLNNTELSHR SAQPLGNGKL PRVSSSPSLK  180
QGGSPLQIKN SGQTRMEMMA NNSNESASEP SGETGSKLPT ELNSSSRKRK TVSRGKTKED  240
SPTQGANGNR GGEADDNARA KRCKQVESTG IEVNMEESKD DETQKQVMEN QKPPEPPKDY  300
IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ  360
RQVEFLSMKL ATVNPNLDYP LSKDICQPNG SLPHPVFPVD KTSSSYQQGR SDIPNGALSR  420
CSVDTLDNSL CRSLGLQLPP LDGFAEYLNQ FPAICEDDLQ SFVQMGFSQN PNKDMTLQSQ  480
GPHQTSHMKI EM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400036170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363454.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLM1BV880.0M1BV88_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000536390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-88bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]