PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400035733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21718.7 Da PI: 7.2687 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.8 | 3.3e-42 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g+i++l+qq+++ PGSC0003DMP400035733 13 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGTISTLNQQVQS 101 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e PGSC0003DMP400035733 102 LQAELNATRAE 112 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.643 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-42 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEPSCTKLNT SIPCAACKLL RRKCAEECPF SPYFSPHEPQ KFAAVHKVFG ASNVSKLLME 60 VPESQRADAA NSLVYEANVR LRDPIYGCMG TISTLNQQVQ SLQAELNATR AEILRYKYRE 120 ATNSLIIAST GIGATVAVAE LPQAPSTPTY PPRPPPPQDS FGVVIPSCSS PPSTHESVYA 180 TPSSGANFSV IPNNNIVPYF D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-45 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-45 | 9 | 116 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400035733 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-173 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344077.1 | 1e-147 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 6e-66 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | M1BU90 | 1e-144 | M1BU90_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052995 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-68 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400035733 |
Publications ? help Back to Top | |||
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