PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035180
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 376aa    MW: 41885.1 Da    PI: 6.7819
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035180genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-133103741374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsev 87 
                           lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla +  +  ++  p++ +  + ns e l+++++++++
  PGSC0003DMP400035180  10 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAATLATKPSTSVPKPFNpfPPNSLEILKIYQILYQA 98 
                           68****************************************************955444444444443301456************** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           +P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++etg+ L+++A++l+vpf
  PGSC0003DMP400035180  99 CPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SPEAVRETGRCLTELAQSLHVPF 183
                           **************************************************************....9********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef++ v ++ledl+ ++++ + gEalaVn+v +lhr++        ++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yys
  PGSC0003DMP400035180 184 EFHP-VGEQLEDLKAHMFNRRIGEALAVNSVNRLHRVP--GN----CIGNLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYS 265
                           ****.7*******************************9..33....4446*************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+fdsl+a++p +s++r+k+E+ ++g+ei+n+v+ceg er  rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e+
  PGSC0003DMP400035180 266 AIFDSLDATFPGDSSQRAKLEQYIFGPEIMNIVSCEGMERMVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTED 354
                           ***************************************************************************************** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l+lgW+dr+++++SaWr
  PGSC0003DMP400035180 355 NGCLLLGWQDRAILAASAWR 374
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.8811354IPR005202Transcription factor GRAS
PfamPF035144.5E-13110374IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MQDQDSGLQL VHLLLACAEA VSKEDYMLAR RYLHHLNRVV TPIGDSMQRV ASCFTEALTA  60
RLAATLATKP STSVPKPFNP FPPNSLEILK IYQILYQACP YVKFAHFTAN QAIFEAFEAE  120
ERVHVIDLDI LQGYQWPAFM QALAARPGGA PFLRITGVGS SPEAVRETGR CLTELAQSLH  180
VPFEFHPVGE QLEDLKAHMF NRRIGEALAV NSVNRLHRVP GNCIGNLLGM IRDQAPNIVT  240
IVEQEASHNG PYFLGRFLEA LHYYSAIFDS LDATFPGDSS QRAKLEQYIF GPEIMNIVSC  300
EGMERMVRHE RLEKWRRVME GKGFKGVALS ANAVTQSKIL LGLYSCDGYK LTEDNGCLLL  360
GWQDRAILAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-102237310378Protein SCARECROW
5b3h_A1e-10223739377Protein SCARECROW
5b3h_D1e-10223739377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154320.0AC215432.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0257H21, complete sequence.
GenBankAC2154570.0AC215457.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0061K08, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338809.20.0PREDICTED: DELLA protein GAI-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLK4BDM90.0K4BDM9_SOLLC; Uncharacterized protein
TrEMBLM1BSY50.0M1BSY5_SOLTU; Uncharacterized protein
STRINGSolyc02g094340.1.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000521910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-101RGA-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]