PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034979
Common NameLOC102586961
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 621aa    MW: 70265.6 Da    PI: 5.1411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034979genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.3e-21484580295
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           +kvl++sdv+++gr+vlpkk ae+h   ++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +FvkangL+egDf+v++  
  PGSC0003DMP400034979 484 QKVLKQSDVNNLGRIVLPKKEAERHlpHLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYA- 570
                           79*************************999999********7778*******99777777777777.********************5. PP

                           SS.SEE..EEE CS
                    B3  86 gr.sefelvvk 95 
                            + ++++++++
  PGSC0003DMP400034979 571 -DmKCGKYLIR 580
                           .4488877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-28475589IPR015300DNA-binding pseudobarrel domain
CDDcd100156.89E-34481582No hitNo description
SuperFamilySSF1019368.83E-23482575IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-19483585IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771483585IPR003340B3 DNA binding domain
PfamPF023622.3E-17484579IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MERELHGVNN EDENTNLVVS VDDDIQMLQQ QQQDCTDFDP MDETDIWLNE NFSTDFTSLQ  60
DFPCMSSSSS TSFSPLTESD PSSGVVLKSD ADEQDFEKKF DTIGDQECLN VMDNVGYIDV  120
NEFLDPMISF LHNENPQEQQ QQPPPQEGDD QGLSFFQGDS ELALMFFEWL KQNKDYISAE  180
DMRSIKLKRS TIESASKRLG STKEGKKQLL RLILDWVEQH RLQKKQMREA EAINQQVLQN  240
SVPYNFDPNA CFYPPQWIPN APFPDSSTPV MTGPIQGYIG DPYSNGGLFP PPYSQTMSGG  300
ATSPTSAEYQ PMDTSQSWSP SQFTMATASQ YNPFPENDST NNVAMPDQSL FGAQYDPYQL  360
FDGNGEILPR LGSCATKEAR KNRMARQRRL RPHHYRHQTR IPRQITNEQS VMMGGEINNN  420
YVMTQANNPG NWVCWPSPPM AMVSQSLPPE RPAMQSQNQQ KQVSASADKK QAFKSEKNLK  480
FLLQKVLKQS DVNNLGRIVL PKKEAERHLP HLETRDGISI AMEDIGTSRV WNMKYRFWPN  540
NKSRMYLLEN TGDFVKANGL QEGDFIVIYA DMKCGKYLIR GVKVRQNGPK SEGKKQTKKN  600
PRKLSSAAAI SSSPVAQAVR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-374795831105B3 domain-containing transcription factor FUS3
6j9b_D3e-374795831105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034979
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352829.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLM1BSH30.0M1BSH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000519340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-114B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]