PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034485
Common NameLOC102596080
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 339aa    MW: 37637.1 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034485genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-09171218455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400034485 171 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 218
                           8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17165235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-11165222No hitNo description
PROSITE profilePS5088815.796167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-17167234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6171218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAFSSHQLQ HNNPFLLDSV FLPTSPIKMS GFFEEPNNSC IVQNCFPQFY QQEFPSNLIL  60
HENSFCLDQT MNDPKSSSSI SLDMDSSSVT DKIESGNNNK ANFSPLDKKR KSSEGSSSMT  120
SAHSKNEKQG DNGKKKKINS KLVAKDEKKA NEEAPTGYIH VRARRGQATD SHSLAERVRR  180
EKISERMKIL QSLVPGCDKV TGKALMLDEI INYVQSLQNQ VEFLSMKLTS LNPMYYDFGM  240
DLDALMVKPD DQSLSGLETQ MANIQQGSTT TTSQAAEVIA NTNSGYPFLD NSTSLMFQQA  300
HFPNSIPQGN GQLLWGADDQ RQKIINQSGF SNNFCSFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8231690.0JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363974.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLM1BRC80.0M1BRC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000511370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-61bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]