PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400034313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 9792.84 Da PI: 5.7471 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.3 | 1.3e-15 | 4 | 47 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + r tfs+R+++++ K ELS+L++a+vav+++s++gk y y PGSC0003DMP400034313 4 EEARAATFSRRKKTLFEKSGELSTLTGADVAVLLISPSGKPYSY 47 567999**********************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.6 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-10 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-18 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-19 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MEAEEARAAT FSRRKKTLFE KSGELSTLTG ADVAVLLISP SGKPYSYGST SIEEVIEKYR 60 ELKSVDRQRD HADVGKSGDH ADVGKSGDQC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400034313 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 2e-93 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541016.1 | 5e-24 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1BQY4 | 2e-58 | M1BQY4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050830 | 3e-59 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14083 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-15 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400034313 |
Publications ? help Back to Top | |||
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