PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034080
Common NameLOC102578947
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 412aa    MW: 46775.9 Da    PI: 8.1073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034080genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-49401661128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           + pGfrF Ptdeel+++yLkkkveg++  + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk
  PGSC0003DMP400034080  40 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPgKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGK 127
                           579************************777.99***************878888999******************************** PP

                   NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++v+s +++ +g+k+tLvf+ grapkg++t+W+mhey +
  PGSC0003DMP400034080 128 ERNVKS-GTNIIGTKRTLVFHIGRAPKGQRTQWIMHEYCM 166
                           ******.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-5637183IPR003441NAC domain
PROSITE profilePS5100553.73340184IPR003441NAC domain
PfamPF023659.1E-2742165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEDEDLLDCS SEKKNGEIVE KSKISNSNGV EISVATASTM FPGFRFCPTD EELISYYLKK  60
KVEGSDKCVE VISEVEIWKH EPWDLPGKSI VQSDNEWFFF SPRGRKYPNG SQSKRATESG  120
YWKATGKERN VKSGTNIIGT KRTLVFHIGR APKGQRTQWI MHEYCMTGNP YYQDSMVVCR  180
LRKNNEFHLN DTPGNQRNHL AVTNDTVDLS RAVQLNGLRG LIDGAECCSK EASSSFSSHS  240
VEQIESGSES DKLNKELPQH HSSSYWKDCD EEDCFADIMK DDIIKLDDSS YKARHNLLPT  300
ITRKLESSTK SPTSQEAQNL MSNRLPFQGT ANRRLKLQTE NVPRGVERSE PHEAIKKNIH  360
ARGISRQLIN IIPVKRMKQW PIPLLLVSLM LLVVFLCLFG VPQQVKWHYS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43311838164NO APICAL MERISTEM PROTEIN
1ut4_B2e-43311838164NO APICAL MERISTEM PROTEIN
1ut7_A2e-43311838164NO APICAL MERISTEM PROTEIN
1ut7_B2e-43311838164NO APICAL MERISTEM PROTEIN
3swm_A2e-433118311167NAC domain-containing protein 19
3swm_B2e-433118311167NAC domain-containing protein 19
3swm_C2e-433118311167NAC domain-containing protein 19
3swm_D2e-433118311167NAC domain-containing protein 19
3swp_A2e-433118311167NAC domain-containing protein 19
3swp_B2e-433118311167NAC domain-containing protein 19
3swp_C2e-433118311167NAC domain-containing protein 19
3swp_D2e-433118311167NAC domain-containing protein 19
4dul_A2e-43311838164NAC domain-containing protein 19
4dul_B2e-43311838164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158695.10.0PREDICTED: NAC domain-containing protein 40-like
SwissprotQ9XIN73e-85NAC40_ARATH; NAC domain-containing protein 40
TrEMBLM1BQC90.0M1BQC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000504820.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-78NTM1-like 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]