PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400034078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 431aa MW: 48940.6 Da PI: 8.2563 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.7 | 1.1e-49 | 40 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrF Ptdeel+++yLkkkveg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk PGSC0003DMP400034078 40 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPgKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGK 127 579************************777.99***************878888999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+s +++ +g+k+tLvf+ grapkg++t+W+mhey + PGSC0003DMP400034078 128 ERNVKS-GTNIIGTKRTLVFHIGRAPKGQRTQWIMHEYCM 166 ******.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-56 | 37 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.733 | 40 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-26 | 42 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MEDEDLLDCS SEKKNGEIVE KSKISNSNGV EISVATASTM FPGFRFCPTD EELISYYLKK 60 KVEGSDKCVE VISEVEIWKH EPWDLPGKSI VQSDNEWFFF SPRGRKYPNG SQSKRATESG 120 YWKATGKERN VKSGTNIIGT KRTLVFHIGR APKGQRTQWI MHEYCMTGNP YYQDSMVVCR 180 LRKNNEFHLN DTPGNQRNHL AVTNDTVDLS RAVQLNGLRG LIDGAECCSK EASSSFSSHS 240 VEQIESGSES DKLNKELPQH HSSSYWKVLL LPLFYTARLL TSVSLYDCDE EDCFADIMKD 300 DIIKLDDSSY KARHNLLPTI TRKLESSTKS PTSQEAQNLM SNRLPFQGTA NRRLKLQTEN 360 VPRGVERSEP HEAIKKNIHA RGISRQLINI IPVKRMKQWP IPLLLVSLML LVVFLCLFGV 420 PQQVKWHYSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-43 | 31 | 185 | 11 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400034078 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158695.1 | 0.0 | PREDICTED: NAC domain-containing protein 40-like | ||||
TrEMBL | M1BQC7 | 0.0 | M1BQC7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400050482 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 5e-78 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400034078 |
Publications ? help Back to Top | |||
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