PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400033929

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 333aa MW: 38213.1 Da PI: 8.3081

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400033929	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3.1e-54	20	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd PGSC0003DMP400033929 20 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKD 107 79***********************999.88***********98999******************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ +++lvg+kktLvfykgrap+gekt+Wv heyrle PGSC0003DMP400033929 108 KEIFR-GRSLVGMKKTLVFYKGRAPRGEKTNWVTHEYRLE 146 *.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-62	10	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	20	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MENFSGTVKM DDQQQQQMEL PPGFRFHPTD EELITHYLSK KVVDMNFSAI AIGDVDMNKI 60 EPWELPWKAK IGEKEWYFFC VRDKKYPTGL RTNRATAAGY WKATGKDKEI FRGRSLVGMK 120 KTLVFYKGRA PRGEKTNWVT HEYRLEGRLS LNNLPKTVKN DWVICRVFQK TTGGKKIHIS 180 GLVRGNSDEN EIVNSVLPPL TDSSPSHVHC FSNYVTTQKN QENNMINSFN NSPNFPLLSN 240 SIDIFQRNSL PNSFTWNQNV PLQHNFPQPG SFPIQDPATL RNLLENYGQN IQHQSFKKET 300 DMITVSQETG ISTDMNTEIT SAQQDLDCFW TY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	17	176	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	17	176	17	174	NAC domain-containing protein 19
3swm_B	2e-55	17	176	17	174	NAC domain-containing protein 19
3swm_C	2e-55	17	176	17	174	NAC domain-containing protein 19
3swm_D	2e-55	17	176	17	174	NAC domain-containing protein 19
3swp_A	2e-55	17	176	17	174	NAC domain-containing protein 19
3swp_B	2e-55	17	176	17	174	NAC domain-containing protein 19
3swp_C	2e-55	17	176	17	174	NAC domain-containing protein 19
3swp_D	2e-55	17	176	17	174	NAC domain-containing protein 19
4dul_A	2e-55	17	176	14	171	NAC domain-containing protein 19
4dul_B	2e-55	17	176	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400033929

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364584.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M1BQ14	0.0	M1BQ14_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050262	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-122	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400033929

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]