PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033590
Common NameLOC102606091
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 303aa    MW: 32056.1 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033590genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09150194554
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  PGSC0003DMP400033590 150 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 194
                           99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPSEGPS DDFFDQIMGF PAYNGAETNL AGNDAGAIPP AMMLQLNSGD GSGQFTGVGL  60
GVGLGGGGFH GHGGGASFPL GLSLEQGKGG FLKMDDVSAP GRRFRDDVVD SRASSSVKPG  120
FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR  180
AVMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE  240
KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP  300
PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349737.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLM1BPA80.0M1BPA8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.24e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]