PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400033524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 18452.3 Da PI: 10.0005 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.5 | 5.4e-53 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+d PGSC0003DMP400033524 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD 101 79***************************9.89***************7777799********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl PGSC0003DMP400033524 102 KIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 *9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-61 | 8 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.417 | 14 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPTTKSGSSR VYTLSPHNLK I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-100 | 1 | 151 | 4 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-100 | 1 | 151 | 4 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-100 | 1 | 151 | 4 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-100 | 1 | 151 | 4 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swm_B | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swm_C | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swm_D | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swp_A | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swp_B | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swp_C | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
3swp_D | 1e-100 | 1 | 151 | 7 | 157 | NAC domain-containing protein 19 |
4dul_A | 1e-100 | 1 | 151 | 4 | 154 | NAC domain-containing protein 19 |
4dul_B | 1e-100 | 1 | 151 | 4 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400033524 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-120 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081066.1 | 1e-108 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-108 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | M1BP50 | 1e-116 | M1BP50_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400049665 | 1e-108 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 1e-102 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400033524 |
Publications ? help Back to Top | |||
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