PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032176
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 386aa    MW: 41151.9 Da    PI: 8.8342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032176genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.35.3e-21299361163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e++ l +++
  PGSC0003DMP400032176 299 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAEVNRIRSEYEHLLAQN 361
                           89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.4E-7137160No hitNo description
PfamPF165961.9E-20193267No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-18292359No hitNo description
SMARTSM003382.1E-22299363IPR004827Basic-leucine zipper domain
PfamPF001701.8E-19299361IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.036301364IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-11302358No hitNo description
CDDcd147021.02E-24304354No hitNo description
PROSITE patternPS000360306321IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGSSEMDKSP KEAKQAKESK PPNSQEQTST TTAGPVNQDW SGFQAYSPMP PHGFMASSPQ  60
AHPYMWGVQQ FMPPYGTPPH PYVAMYPHGG IYAHPSIAPG SYPFSPFAMP SPNGVAEASV  120
NNSGNVEVDG KSSEGKEKLP IKRSRGSLGS LNMITGKNNG PERCGCDWFV VGGRTPEHEA  180
KLLGLGCGVT IRESPMNSGG RQDSADTSQN GNAAHGSQNG GTGTPHSMIN QTMAIVSAAG  240
AGGIPGPTTN LNIGMDYWGA ATSSSIPAMH GKVPVSVAGG LVTAGSRDSV QSQMWIQDER  300
ELKRQKRKQS NRESARRSRL RKQAECDELA QRAEVLKEEN ASLRAEVNRI RSEYEHLLAQ  360
NASLKVFSST LNKDNFKDLP QGLTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321RRSRLRK
2315322RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109391e-144AP010939.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0175O15, complete sequence.
GenBankHG9754471e-144HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-144HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361261.10.0PREDICTED: transcription factor HBP-1a
RefseqXP_015170677.10.0PREDICTED: transcription factor HBP-1a
SwissprotQ501B21e-141BZP16_ARATH; bZIP transcription factor 16
TrEMBLM1BKX70.0M1BKX7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000475220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-142basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]