PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032120
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 283aa    MW: 32595.9 Da    PI: 7.3687
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032120genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-5391341128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL+ +++++++++ ++i+e+diyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+d
  PGSC0003DMP400032120   9 LPPGFRFHPTDEELIMYYLRYQATSRPCPV-SIIPEIDIYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTD 96 
                           79****************************.89***************99999************************************ PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++s  ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl
  PGSC0003DMP400032120  97 KAIYS-ANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRL 134
                           *****.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-655162IPR003441NAC domain
PROSITE profilePS5100561.1339162IPR003441NAC domain
PfamPF023655.9E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVGKISSDLP PGFRFHPTDE ELIMYYLRYQ ATSRPCPVSI IPEIDIYKFD PWELPEKAEF  60
GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SANKYVGIKK ALVFYKGKPP  120
KGVKTDWIMH EYRLSDSKSQ TYSKQSGSMR LDDWVLCRIY KKKNLGKTIE MMKVEEEELE  180
AQNVSINNAI EVVGGPQTMK LPRICSLSHL LELDYYGSIP QLLSDNLLYD DQSYTMNNMS  240
NTSNVDQVSS QQQNTNNITS NNCNIFFNYQ QPLFVNPTFQ SQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-74816414170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0918740.0EF091874.1 Solanum tuberosum NAC domain protein NAC2 (NAC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275015.10.0NAC transcription factor 29-like
SwissprotK4BWV20.0NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLM1BKS30.0M1BKS3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000474400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-108NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]