PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031944
Common NameLOC102590233
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 453aa    MW: 49967.4 Da    PI: 5.8031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031944genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13279325455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  PGSC0003DMP400031944 279 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 325
                           799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-5230215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17277336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.06E-15278328No hitNo description
PfamPF000101.1E-10279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16279334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEQLLVSSSP MAAASLPPPP VDVNQVPLDL QQMLQYVVKS QPEWWAYAIF WQTSTDDDGK  60
NFLAWGDGYF QGDGVVNNNK GSSSSSSSLK SQAQSERKKV IKGIQALMDG NGDTDLVDDG  120
DVTDTEWFYV MSLARSFSAG DGSVTGKAFG SDDFLWITGP AQFQLHYSCE RAKEAQIHGI  180
QTLVCIPTSN GVFELGSTQL IKQNLSLVQQ VKSLFLCCPP IQFLEKSICF ADIGLVTGLQ  240
QDDNDDKLRE NSKKQPQPVV AKKKRGRKPK EDANMAALNH VEAERQRREK LNHRFYALRS  300
VVPNVSRMDK ASLLSDAVSY INQLKAKVDE LELQLIDHTK KPKNVTESSS ADNQSTTTSS  360
DDQVIKANST AAPEVEVKII GTDAMIRVQS ENVDYPSAKL MIALQNLQMQ VHHASISSVN  420
HLVLHDVVVR VPQGLSTEDE LRTALLTRLE HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-36302159192Transcription factor MYC3
4rqw_B5e-36302159192Transcription factor MYC3
4rs9_A5e-36302159192Transcription factor MYC3
4yz6_A5e-36302159192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357552.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM1BKB30.0M1BKB3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000472200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-78bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]