PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030812
Common NameLOC102597667
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34666.4 Da    PI: 4.6373
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030812genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1880133356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++ ++q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  PGSC0003DMP400030812  80 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 133
                           45578899*********************************************9 PP
2HD-ZIP_I/II124.25.9e-4079170192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl  +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+
  PGSC0003DMP400030812  79 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDVLKASFDKLKADYDTLFKENEDLRN 167
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           e++
  PGSC0003DMP400030812 168 EVH 170
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1866135IPR009057Homeodomain-like
PROSITE profilePS5007117.0775135IPR001356Homeobox domain
SMARTSM003894.2E-1878139IPR001356Homeobox domain
PfamPF000462.0E-1580133IPR001356Homeobox domain
CDDcd000861.50E-1680135No hitNo description
Gene3DG3DSA:1.10.10.602.7E-1883142IPR009057Homeodomain-like
PRINTSPR000311.1E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5115131IPR000047Helix-turn-helix motif
PfamPF021833.5E-16135176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEVGRVINES SNTVLVPTEK LSHCLWMSNS SPSFHGSASM VNFEDVGRGE VTKERPFFPA  60
IDNEETSNDD YDSCYHQPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL ANELGLQPRQ  120
IAIWFQNRRA RYKTKVLEKD YDVLKASFDK LKADYDTLFK ENEDLRNEVH LLTQKLHRKE  180
KGKENSEQSV PISPIDTQEA QKTTTPIVVT SDVPSIPKLM CKQEDATSAK SDVIDSNSPH  240
YTDGNHSSNV FEQEPSDFSQ DEDDNLSKSF LCFPEIGDQI QANSCNLSFQ IEDQPCWFWQ  300
Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357259.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotA2X9803e-43HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ022834e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
SwissprotQ6YWR43e-43HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLM1BHQ20.0M1BHQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000454710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]