PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030026
Common NameLOC102604540
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 420aa    MW: 46479.3 Da    PI: 7.2321
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030026genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.5e-32163217358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e +
  PGSC0003DMP400030026 163 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 217
                           789*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-30164216IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-30165216IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-22165217IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735166215IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MQKQNIYPDF RLSDAKSVNW NTDPSKLHPS INGLSAPATD EKPMSLQVPA VSQCLSVPSI  60
RPPLPLLAHS VSVAGRLCAD RLTTSGIYVP QSYPKGILGS PIFGRNEQAG RGSTFPSPSQ  120
ALDQSSLAQQ HNQLNSYKEP KMTVRIAQSQ PPSTTSVSDT TSSIRYRECL KNHAASMGGH  180
ALDGCGEFMP SGEEGTPGAL KCAACNCHQN FHRKEIDDYQ QMDDVGSHSR FSQPRNNSSS  240
GSIQNQSPIS LPTQQLQQYH HDYSNSCSPR SLVDSLQPYT QPPSPTSGSV FSQQAWERIE  300
PSSIRPSYSY EMVNHNTMQN GKQREYSWSD SSSNTSRSRD HPSIRNENWN FDMFKPLNNR  360
TPDHIPLEFP AYPSRCQPQT VFADEFPHLD IINNLLHEEH GTGRTLMSNS GFQRLNNGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354529.10.0PREDICTED: uncharacterized protein LOC102604540
TrEMBLM1BFX10.0M1BFX1_SOLTU; Uncharacterized protein
TrEMBLM1BFX20.0M1BFX2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000442690.0(Solanum tuberosum)
STRINGPGSC0003DMT4000442700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14101810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-26homeobox protein 33
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]