PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029334
Common NameLOC102592561
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 326aa    MW: 36691 Da    PI: 4.3953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029334genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1962115356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++  +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k
  PGSC0003DMP400029334  62 KKRRLRVDQVKALEKNFEVDNKLDPERKMKLAQELGLQPRQVAIWFQNRRARWK 115
                           45578899*********************************************9 PP
2HD-ZIP_I/II126.51.1e-4061153193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl  +qvk+LE++Fe ++kL+perK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e++++++e+L +
  PGSC0003DMP400029334  61 EKKRRLRVDQVKALEKNFEVDNKLDPERKMKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESIQHDNEALLK 149
                           69*************************************************************************************99 PP

           HD-ZIP_I/II  90 elke 93 
                           e++e
  PGSC0003DMP400029334 150 EINE 153
                           9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.31357117IPR001356Homeobox domain
SuperFamilySSF466892.35E-1959119IPR009057Homeodomain-like
SMARTSM003893.5E-1860121IPR001356Homeobox domain
PfamPF000462.6E-1662115IPR001356Homeobox domain
CDDcd000861.31E-1662118No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2069116IPR009057Homeodomain-like
PRINTSPR000318.3E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000318.3E-697113IPR000047Helix-turn-helix motif
PfamPF021838.6E-18117159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKRVRSNDSL GAPLTSICQN TTDEHNNWNN HVYSRDFQSM LEGLDDDEAT TCVEESGVGS  60
EKKRRLRVDQ VKALEKNFEV DNKLDPERKM KLAQELGLQP RQVAIWFQNR RARWKTKQLE  120
RDYNVLKANF DSLKHNYESI QHDNEALLKE INELKSKLQG GNNEIKIAVK EEAFESESDD  180
KETEQSNQCN NSNTELNFDT IIMNPSIIFT DFKDGSSDSD SSAILNEDNA VISSSEAFLI  240
KSGSGSGSGS GSGSSSPDSN SSLNCFQFLE SNPKSILTNE VDFSSSQFVK LEEHNFFSGE  300
ESCSTLLFTD EQAPTLHWYC SEDWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-151HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366219.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLM1BEC00.0M1BEC0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000432510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-68homeobox protein 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]