PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029282
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family EIL
Protein Properties Length: 279aa    MW: 32287 Da    PI: 4.5447
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029282genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3127.71.8e-3932125298
                           XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                           +lkkrmwkd+m+l++l+ ++  +  + e   + +++ k +eq+rrkkmsraQD+iLkYM+k+mevc+ qGfvYgi+ ekgkpv+g+sds
  PGSC0003DMP400029282  32 DLKKRMWKDRMKLQKLEAKRDMSSFKDE---SDETQAKQEEQSRRKKMSRAQDSILKYMVKIMEVCKGQGFVYGIVGEKGKPVSGSSDS 117
                           9*************99988887553333...35567899************************************************** PP

                           XXXXXXXX CS
                  EIN3  91 LraWWkek 98 
                           Lr+WW+ek
  PGSC0003DMP400029282 118 LREWWREK 125
                           *******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.5E-3831125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVEFHEIVEP SSDPMRELLE VGDDEENISY NDLKKRMWKD RMKLQKLEAK RDMSSFKDES  60
DETQAKQEEQ SRRKKMSRAQ DSILKYMVKI MEVCKGQGFV YGIVGEKGKP VSGSSDSLRE  120
WWREKSLKIS SSEEEEDVAL VTKNVFVDVS ARRRKDKRKC NFEHDTRCPY CENGGLHDQE  180
SINNLVEAQT LPREEWIAKE EEISPHDWMN MEIQKSFNNY DAQFTVCSGI QNNFESYSGE  240
NVLEQLLSYP ATCGSMNIDG TQLEADLNQE IATSIWDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RRRKDK
2152158RRKDKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-137HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162960.11e-109PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLM1BE710.0M1BE71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000431600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1573646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.13e-35ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]