PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028358
Common NameLOC102597110
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 434aa    MW: 47084.2 Da    PI: 8.5951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028358genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114873227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          +++ C+++ rtG C++G++C+F+H+p
  PGSC0003DMP400028358 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                          6899********************97 PP
2zf-CCCH39.21.2e-1294118327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C++f++tGtCk+G++CkF+H++
  PGSC0003DMP400028358  94 QPECQYFLKTGTCKFGATCKFHHPK 118
                           799********************96 PP
3zf-CCCH38.91.5e-12140164327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C +++rtG+Ck+G++CkF+H++
  PGSC0003DMP400028358 140 ESECAYYMRTGQCKFGSTCKFHHPQ 164
                           679********************97 PP
4zf-CCCH37.53.8e-12293319127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+f+++tG Ck+G+ C+F+H++
  PGSC0003DMP400028358 293 PGQAECQFYMKTGDCKFGAVCRFHHPR 319
                           5789*********************96 PP
5zf-CCCH39.21.2e-12340365227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++lC f++r+G+Ck+G++CkF H++
  PGSC0003DMP400028358 340 GEPLCIFYSRYGICKFGPSCKFDHPM 365
                           689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-45272IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23491119IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-597117IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4143163IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136292320IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6295322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5298322IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718338366IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10340365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRDSIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RIGQPECQYF LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VLGYPLRPNE SECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQGPSG YTPLIVPQGV VSVPGFAYSG QMGSVSSPEG  240
QGQTAGNNQV YGTSRSSDPA TMGSQGVTSP YRQASGPMGY YALQGENVFP ERPGQAECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPPPDCLL SPIGLPLRTG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SIAASSTTDA PTVQRLLGSS SGTSALNMTS EGLVEAVSTK PRRLSLSETR  420
KMPSGDNNID REG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028358
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353234.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM1BC390.0M1BC39_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000418440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-179zinc finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]