PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028357
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 303aa    MW: 32596.8 Da    PI: 8.5268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028357genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-12933327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          +++C +++rtG+Ck+G++CkF+H++
  PGSC0003DMP400028357  9 ESECAYYMRTGQCKFGSTCKFHHPQ 33
                          579********************97 PP
2zf-CCCH38.22.4e-12162188127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+f+++tG Ck+G+ C+F+H++
  PGSC0003DMP400028357 162 PGQAECQFYMKTGDCKFGAVCRFHHPR 188
                           5789*********************96 PP
3zf-CCCH39.87.3e-13209234227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++lC f++r+G+Ck+G++CkF H++
  PGSC0003DMP400028357 209 GEPLCIFYSRYGICKFGPSCKFDHPM 234
                           689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.793634IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5833IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6934IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10933IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-51232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136161189IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5161188IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9163188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5167191IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718207235IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10209234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5210234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4212232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPFFYPQNES ECAYYMRTGQ CKFGSTCKFH HPQPSNMMVS LRGSPVYPPV PSATTPGQLS  60
YPLSRGSFIP GARWQGPSGY TPLIVPQGVV SVPGFAYSGQ MGSVSSPEGQ GQTAGNNQVY  120
GTSRSSDPAT MGSQGVTSPY RQASGPMGYY ALQGENVFPE RPGQAECQFY MKTGDCKFGA  180
VCRFHHPRER LIPPPDCLLS PIGLPLRTGE PLCIFYSRYG ICKFGPSCKF DHPMTVFTYS  240
IAASSTTDAP TVQRLLGSSS GTSALNMTSE GLVEAVSTKP RRLSLSETRK MPSGDNNIDR  300
EG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353234.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-140ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM1BC380.0M1BC38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000418440.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-95zinc finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]