PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028208
Common NameLOC102586298
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 349aa    MW: 39105.7 Da    PI: 4.3154
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028208genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-1857110356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PGSC0003DMP400028208  57 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                           456899***********************************************9 PP
2HD-ZIP_I/II130.56.7e-4256148193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +
  PGSC0003DMP400028208  56 QKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLKHDNEALGK 144
                           69*************************************************************************************99 PP

           HD-ZIP_I/II  90 elke 93 
                           e++e
  PGSC0003DMP400028208 145 EIRE 148
                           9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.8852112IPR001356Homeobox domain
SuperFamilySSF466893.29E-1953114IPR009057Homeodomain-like
SMARTSM003894.6E-1855116IPR001356Homeobox domain
CDDcd000862.08E-1756113No hitNo description
PfamPF000468.1E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-2059119IPR009057Homeodomain-like
PRINTSPR000311.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.0E-592108IPR000047Helix-turn-helix motif
PfamPF021839.4E-17112152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKRLSSSDSL GALMSMCPST TDDQNHGNSH VYSTRDFQSM LELGLDEEGC VEESGQKKRR  60
LSVEQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYNV  120
LKANFDSLKH NYESLKHDNE ALGKEIRELK LKVYGGENGE SRGAVVVSVK EEAMESENDD  180
KMIEQNKPND LLEEEEDEDQ DQDDDVEINA TIASTIFADF NKDGSSDSDN SSAILNEDNS  240
PNAAAISSSG AFLISNDGGV GCSSPLNFTF KFTESSPKSI LGDSQKANCF TYQPSSTTTT  300
TQYVKMEEHN FFNGEESCST LFSDEQAPTL QWYCSEDWNF KDTPSHLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353200.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLM1BBQ50.0M1BBQ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000416550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-63homeobox protein 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]